Detailed information of SNP:
|
SNP ID:
sf1118997495(Gbrowse)
Chromosome: chr11 Position: 18997495 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 64.16% | 35.84% |
| All Indica | 792 | 99.12% | 0.88% |
| All Japonica | 496 | 4.84% | 95.16% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 208 | 99.52% | 0.48% |
| Indica Intermediate | 209 | 98.56% | 1.44% |
| Temperate Japonica | 335 | 3.28% | 96.72% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 67 | 7.46% | 92.54% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1118997495 | A->G | INTERGENIC | None |