Detailed information of SNP:
|
SNP ID:
sf1118998150(Gbrowse)
Chromosome: chr11 Position: 18998150 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 63.85% | 36.15% |
| All Indica | 791 | 98.99% | 1.01% |
| All Japonica | 496 | 4.44% | 95.56% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 374 | 99.20% | 0.80% |
| Indica II | 209 | 99.04% | 0.96% |
| Indica Intermediate | 208 | 98.56% | 1.44% |
| Temperate Japonica | 334 | 2.99% | 97.01% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1118998150 | T->C | INTERGENIC | None |