Detailed information of SNP:
|
SNP ID:
sf1118998409(Gbrowse)
Chromosome: chr11 Position: 18998409 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 63.78% | 36.22% |
| All Indica | 793 | 98.87% | 1.13% |
| All Japonica | 497 | 4.63% | 95.37% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 209 | 99.04% | 0.96% |
| Indica Intermediate | 209 | 98.09% | 1.91% |
| Temperate Japonica | 335 | 3.28% | 96.72% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1118998409 | T->G | INTERGENIC | None |