Detailed information of SNP:
|
SNP ID:
sf1118998854(Gbrowse)
Chromosome: chr11 Position: 18998854 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 63.43% | 36.57% |
| All Indica | 795 | 98.36% | 1.64% |
| All Japonica | 495 | 4.04% | 95.96% |
| Aus | 65 | 96.92% | 3.08% |
| Indica I | 374 | 98.93% | 1.07% |
| Indica II | 210 | 98.10% | 1.90% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 3.28% | 96.72% |
| Tropical Japonica | 93 | 6.45% | 93.55% |
| Japonica Intermediate | 67 | 4.48% | 95.52% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1118998854 | T->G | INTERGENIC | None |