Detailed information of SNP:
|
SNP ID:
sf1119004947(Gbrowse)
Chromosome: chr11 Position: 19004947 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1407 | 61.05% | 38.95% |
| All Indica | 790 | 96.33% | 3.67% |
| All Japonica | 497 | 3.82% | 96.18% |
| Aus | 64 | 82.81% | 17.19% |
| Indica I | 374 | 97.33% | 2.67% |
| Indica II | 208 | 94.23% | 5.77% |
| Indica Intermediate | 208 | 96.63% | 3.37% |
| Temperate Japonica | 335 | 3.58% | 96.42% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1119004947 | G->A | INTERGENIC | None |