Detailed information of SNP:
|
SNP ID:
sf1119008362(Gbrowse)
Chromosome: chr11 Position: 19008362 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 85.82% | 14.18% |
| All Indica | 799 | 90.36% | 9.64% |
| All Japonica | 495 | 85.25% | 14.75% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 213 | 82.63% | 17.37% |
| Indica Intermediate | 211 | 89.10% | 10.90% |
| Temperate Japonica | 334 | 95.21% | 4.79% |
| Tropical Japonica | 94 | 56.38% | 43.62% |
| Japonica Intermediate | 67 | 76.12% | 23.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1119008362 | C->T | INTERGENIC | None |