Detailed information of SNP:
|
SNP ID:
sf1119045931(Gbrowse)
Chromosome: chr11 Position: 19045931 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1358 | 53.02% | 46.98% |
| All Indica | 744 | 27.15% | 72.85% |
| All Japonica | 495 | 96.57% | 3.43% |
| Aus | 64 | 9.38% | 90.62% |
| Indica I | 352 | 28.69% | 71.31% |
| Indica II | 201 | 23.88% | 76.12% |
| Indica Intermediate | 191 | 27.75% | 72.25% |
| Temperate Japonica | 334 | 97.90% | 2.10% |
| Tropical Japonica | 93 | 92.47% | 7.53% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1119045931 | A->G | LOC_Os11g33010(LOC_Os11g33010.1) | Synonymous |