Detailed information of SNP:
|
SNP ID:
sf1119049956(Gbrowse)
Chromosome: chr11 Position: 19049956 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1395 | 51.76% | 48.24% |
| All Indica | 782 | 26.47% | 73.53% |
| All Japonica | 492 | 96.75% | 3.25% |
| Aus | 65 | 7.69% | 92.31% |
| Indica I | 366 | 30.87% | 69.13% |
| Indica II | 208 | 16.83% | 83.17% |
| Indica Intermediate | 208 | 28.37% | 71.63% |
| Temperate Japonica | 334 | 98.20% | 1.80% |
| Tropical Japonica | 92 | 93.48% | 6.52% |
| Japonica Intermediate | 66 | 93.94% | 6.06% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1119049956 | C->T | INTERGENIC | None |