Detailed information of SNP:
|
SNP ID:
sf1119054354(Gbrowse)
Chromosome: chr11 Position: 19054354 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1401 | 92.29% | 7.71% |
| All Indica | 793 | 91.80% | 8.20% |
| All Japonica | 487 | 98.36% | 1.64% |
| Aus | 65 | 50.77% | 49.23% |
| Indica I | 372 | 93.55% | 6.45% |
| Indica II | 211 | 91.47% | 8.53% |
| Indica Intermediate | 210 | 89.05% | 10.95% |
| Temperate Japonica | 334 | 98.50% | 1.50% |
| Tropical Japonica | 90 | 97.78% | 2.22% |
| Japonica Intermediate | 63 | 98.41% | 1.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1119054354 | T->C | LOC_Os11g33020(LOC_Os11g33020.1) | Non-Synonymous SNP |