Detailed information of SNP:
|
SNP ID:
sf1119055465(Gbrowse)
Chromosome: chr11 Position: 19055465 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1298 | 80.66% | 19.34% |
| All Indica | 694 | 72.19% | 27.81% |
| All Japonica | 487 | 97.54% | 2.46% |
| Aus | 63 | 41.27% | 58.73% |
| Indica I | 316 | 75.95% | 24.05% |
| Indica II | 190 | 67.37% | 32.63% |
| Indica Intermediate | 188 | 70.74% | 29.26% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 92 | 94.57% | 5.43% |
| Japonica Intermediate | 60 | 98.33% | 1.67% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1119055465 | T->C | INTERGENIC | None |