Detailed information of SNP:



SNP ID: sf1119055465(Gbrowse)

Chromosome: chr11

Position: 19055465
Major allele: T

Minor allele: C

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1298 80.66% 19.34%
All Indica694 72.19% 27.81%
All Japonica487 97.54% 2.46%
Aus63 41.27% 58.73%
Indica I316 75.95% 24.05%
Indica II190 67.37% 32.63%
Indica Intermediate188 70.74% 29.26%
Temperate Japonica335 98.21% 1.79%
Tropical Japonica92 94.57% 5.43%
Japonica Intermediate60 98.33% 1.67%
Group VI/Aromatic14 100.00% 0.00%
Intermediate40 77.50% 22.50%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1119055465 T->C INTERGENIC None