Detailed information of SNP:
|
SNP ID:
sf1119055470(Gbrowse)
Chromosome: chr11 Position: 19055470 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 95.65% | 4.35% |
| All Indica | 784 | 93.49% | 6.51% |
| All Japonica | 496 | 98.39% | 1.61% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 98.66% | 1.34% |
| Indica II | 206 | 85.92% | 14.08% |
| Indica Intermediate | 206 | 91.75% | 8.25% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1119055470 | G->A | INTERGENIC | None |