Detailed information of SNP:
|
SNP ID:
sf1119056062(Gbrowse)
Chromosome: chr11 Position: 19056062 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 52.80% | 47.20% |
| All Indica | 794 | 24.94% | 75.06% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 373 | 18.50% | 81.50% |
| Indica II | 212 | 33.02% | 66.98% |
| Indica Intermediate | 209 | 28.23% | 71.77% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1119056062 | G->A | INTERGENIC | None |