Detailed information of SNP:
|
SNP ID:
sf1119079334(Gbrowse)
Chromosome: chr11 Position: 19079334 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 98.30% | 1.70% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 492 | 95.12% | 4.88% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 95.81% | 4.19% |
| Tropical Japonica | 92 | 93.48% | 6.52% |
| Japonica Intermediate | 66 | 93.94% | 6.06% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1119079334 | A->G | LOC_Os11g33060(LOC_Os11g33060.1) | Non-Synonymous SNP |