Detailed information of SNP:
|
SNP ID:
sf1119088000(Gbrowse)
Chromosome: chr11 Position: 19088000 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1396 | 97.99% | 2.01% |
| All Indica | 779 | 96.79% | 3.21% |
| All Japonica | 495 | 99.60% | 0.40% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 98.66% | 1.34% |
| Indica II | 198 | 94.44% | 5.56% |
| Indica Intermediate | 208 | 95.67% | 4.33% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1119088000 | G->A | LOC_Os11g33070(LOC_Os11g33070.1) | Synonymous |