Detailed information of SNP:
|
SNP ID:
sf1119112732(Gbrowse)
Chromosome: chr11 Position: 19112732 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1352 | 69.23% | 30.77% |
| All Indica | 733 | 95.50% | 4.50% |
| All Japonica | 496 | 27.42% | 72.58% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 339 | 94.40% | 5.60% |
| Indica II | 207 | 96.62% | 3.38% |
| Indica Intermediate | 187 | 96.26% | 3.74% |
| Temperate Japonica | 334 | 11.38% | 88.62% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 68 | 36.76% | 63.24% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1119112732 | T->C | INTERGENIC | None |