Detailed information of SNP:
|
SNP ID:
sf1119128283(Gbrowse)
Chromosome: chr11 Position: 19128283 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 94.41% | 5.59% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 491 | 84.52% | 15.48% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 331 | 81.57% | 18.43% |
| Tropical Japonica | 93 | 90.32% | 9.68% |
| Japonica Intermediate | 67 | 91.04% | 8.96% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1119128283 | G->A | LOC_Os11g33120(LOC_Os11g33120.3) | INTRON |
| sf1119128283 | G->A | LOC_Os11g33120(LOC_Os11g33120.2) | INTRON |
| sf1119128283 | G->A | LOC_Os11g33120(LOC_Os11g33120.1) | INTRON |