Detailed information of SNP:
|
SNP ID:
sf1119192637(Gbrowse)
Chromosome: chr11 Position: 19192637 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 90.98% | 9.02% |
| All Indica | 799 | 85.86% | 14.14% |
| All Japonica | 497 | 97.59% | 2.41% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 84.80% | 15.20% |
| Indica II | 213 | 82.16% | 17.84% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1119192637 | T->C | INTERGENIC | None |