Detailed information of SNP:
|
SNP ID:
sf1119245674(Gbrowse)
Chromosome: chr11 Position: 19245674 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 59.34% | 40.66% |
| All Indica | 799 | 90.24% | 9.76% |
| All Japonica | 497 | 5.84% | 94.16% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 78.67% | 21.33% |
| Temperate Japonica | 335 | 7.16% | 92.84% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1119245674 | A->G | LOC_Os11g33330(LOC_Os11g33330.1) | INTRON |