Detailed information of SNP:
|
SNP ID:
sf1119250112(Gbrowse)
Chromosome: chr11 Position: 19250112 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 85.06% | 14.94% |
| All Indica | 793 | 76.04% | 23.96% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 374 | 89.04% | 10.96% |
| Indica II | 212 | 51.42% | 48.58% |
| Indica Intermediate | 207 | 77.78% | 22.22% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1119250112 | A->G | LOC_Os11g33330(LOC_Os11g33330.1) | INTRON |