Detailed information of SNP:
|
SNP ID:
sf1119253004(Gbrowse)
Chromosome: chr11 Position: 19253004 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 68.71% | 31.29% |
| All Indica | 799 | 91.24% | 8.76% |
| All Japonica | 497 | 30.78% | 69.22% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 211 | 83.89% | 16.11% |
| Temperate Japonica | 335 | 37.31% | 62.69% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1119253004 | G->T | INTERGENIC | None |