Detailed information of SNP:
|
SNP ID:
sf1119289820(Gbrowse)
Chromosome: chr11 Position: 19289820 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1353 | 95.27% | 4.73% |
| All Indica | 737 | 92.13% | 7.87% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 353 | 93.20% | 6.80% |
| Indica II | 189 | 92.06% | 7.94% |
| Indica Intermediate | 195 | 90.26% | 9.74% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 87.18% | 12.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1119289820 | C->A | INTERGENIC | None |