Detailed information of SNP:
|
SNP ID:
sf1119290496(Gbrowse)
Chromosome: chr11 Position: 19290496 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 92.37% | 7.63% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 494 | 80.77% | 19.23% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 332 | 75.00% | 25.00% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1119290496 | A->C | LOC_Os11g33394(LOC_Os11g33394.2) | Non-Synonymous SNP |
| sf1119290496 | A->C | LOC_Os11g33394(LOC_Os11g33394.1) | Non-Synonymous SNP |