Detailed information of SNP:
|
SNP ID:
sf1119290522(Gbrowse)
Chromosome: chr11 Position: 19290522 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 91.94% | 8.06% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 493 | 79.51% | 20.49% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 331 | 73.41% | 26.59% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1119290522 | G->A | LOC_Os11g33394(LOC_Os11g33394.2) | Non-Synonymous SNP |
| sf1119290522 | G->A | LOC_Os11g33394(LOC_Os11g33394.1) | Non-Synonymous SNP |