Detailed information of SNP:
|
SNP ID:
sf1119294806(Gbrowse)
Chromosome: chr11 Position: 19294806 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 80.89% | 19.11% |
| All Indica | 799 | 69.34% | 30.66% |
| All Japonica | 496 | 96.77% | 3.23% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 66.40% | 33.60% |
| Indica II | 213 | 69.95% | 30.05% |
| Indica Intermediate | 211 | 73.93% | 26.07% |
| Temperate Japonica | 335 | 95.82% | 4.18% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1119294806 | G->A | LOC_Os11g33394(LOC_Os11g33394.2) | INTRON |
| sf1119294806 | G->A | LOC_Os11g33394(LOC_Os11g33394.1) | INTRON |