Detailed information of SNP:
|
SNP ID:
sf1119308989(Gbrowse)
Chromosome: chr11 Position: 19308989 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 52.67% | 47.33% |
| All Indica | 791 | 80.53% | 19.47% |
| All Japonica | 493 | 10.55% | 89.45% |
| Aus | 66 | 40.91% | 59.09% |
| Indica I | 372 | 91.67% | 8.33% |
| Indica II | 211 | 69.67% | 30.33% |
| Indica Intermediate | 208 | 71.63% | 28.37% |
| Temperate Japonica | 335 | 8.36% | 91.64% |
| Tropical Japonica | 91 | 15.38% | 84.62% |
| Japonica Intermediate | 67 | 14.93% | 85.07% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1119308989 | T->C | INTERGENIC | None |