Detailed information of SNP:
|
SNP ID:
sf1119337412(Gbrowse)
Chromosome: chr11 Position: 19337412 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1408 | 94.03% | 5.97% |
| All Indica | 796 | 92.46% | 7.54% |
| All Japonica | 491 | 98.78% | 1.22% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 211 | 91.00% | 9.00% |
| Indica Intermediate | 210 | 88.10% | 11.90% |
| Temperate Japonica | 329 | 99.39% | 0.61% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1119337412 | A->G | INTERGENIC | None |