Detailed information of SNP:
|
SNP ID:
sf1119354291(Gbrowse)
Chromosome: chr11 Position: 19354291 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1379 | 98.04% | 1.96% |
| All Indica | 761 | 96.71% | 3.29% |
| All Japonica | 495 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 352 | 95.45% | 4.55% |
| Indica II | 207 | 99.03% | 0.97% |
| Indica Intermediate | 202 | 96.53% | 3.47% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1119354291 | C->T | INTERGENIC | None |