Detailed information of SNP:
|
SNP ID:
sf1119369128(Gbrowse)
Chromosome: chr11 Position: 19369128 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1387 | 58.83% | 41.17% |
| All Indica | 777 | 35.52% | 64.48% |
| All Japonica | 488 | 92.62% | 7.38% |
| Aus | 66 | 74.24% | 25.76% |
| Indica I | 364 | 18.96% | 81.04% |
| Indica II | 207 | 60.87% | 39.13% |
| Indica Intermediate | 206 | 39.32% | 60.68% |
| Temperate Japonica | 327 | 95.41% | 4.59% |
| Tropical Japonica | 93 | 87.10% | 12.90% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1119369128 | A->C | INTERGENIC | None |