Detailed information of SNP:
|
SNP ID:
sf1119370388(Gbrowse)
Chromosome: chr11 Position: 19370388 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 80.61% | 19.39% |
| All Indica | 799 | 78.22% | 21.78% |
| All Japonica | 497 | 87.93% | 12.07% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 375 | 88.80% | 11.20% |
| Indica II | 213 | 59.15% | 40.85% |
| Indica Intermediate | 211 | 78.67% | 21.33% |
| Temperate Japonica | 335 | 85.37% | 14.63% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1119370388 | A->G | INTERGENIC | None |