Detailed information of SNP:
|
SNP ID:
sf1119377947(Gbrowse)
Chromosome: chr11 Position: 19377947 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1346 | 97.33% | 2.67% |
| All Indica | 734 | 95.64% | 4.36% |
| All Japonica | 494 | 99.60% | 0.40% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 332 | 96.08% | 3.92% |
| Indica II | 199 | 95.48% | 4.52% |
| Indica Intermediate | 203 | 95.07% | 4.93% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 97.30% | 2.70% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1119377947 | A->G | LOC_Os11g33960(LOC_Os11g33960.1) | INTRON |