Detailed information of SNP:
|
SNP ID:
sf1119386313(Gbrowse)
Chromosome: chr11 Position: 19386313 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 64.32% | 35.68% |
| All Indica | 799 | 62.70% | 37.30% |
| All Japonica | 496 | 63.10% | 36.90% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 62.93% | 37.07% |
| Indica II | 213 | 67.61% | 32.39% |
| Indica Intermediate | 211 | 57.35% | 42.65% |
| Temperate Japonica | 334 | 83.23% | 16.77% |
| Tropical Japonica | 94 | 14.89% | 85.11% |
| Japonica Intermediate | 68 | 30.88% | 69.12% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1119386313 | C->G | INTERGENIC | None |