Detailed information of SNP:
|
SNP ID:
sf1119386495(Gbrowse)
Chromosome: chr11 Position: 19386495 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 69.71% | 30.29% |
| All Indica | 796 | 69.22% | 30.78% |
| All Japonica | 488 | 66.39% | 33.61% |
| Aus | 64 | 93.75% | 6.25% |
| Indica I | 375 | 68.53% | 31.47% |
| Indica II | 213 | 72.77% | 27.23% |
| Indica Intermediate | 208 | 66.83% | 33.17% |
| Temperate Japonica | 330 | 86.67% | 13.33% |
| Tropical Japonica | 91 | 17.58% | 82.42% |
| Japonica Intermediate | 67 | 32.84% | 67.16% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1119386495 | C->T | INTERGENIC | None |