Detailed information of SNP:
|
SNP ID:
sf1119389806(Gbrowse)
Chromosome: chr11 Position: 19389806 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1235 | 50.28% | 49.72% |
| All Indica | 633 | 40.13% | 59.87% |
| All Japonica | 495 | 62.42% | 37.58% |
| Aus | 55 | 43.64% | 56.36% |
| Indica I | 326 | 39.88% | 60.12% |
| Indica II | 134 | 50.75% | 49.25% |
| Indica Intermediate | 173 | 32.37% | 67.63% |
| Temperate Japonica | 333 | 84.08% | 15.92% |
| Tropical Japonica | 94 | 15.96% | 84.04% |
| Japonica Intermediate | 68 | 20.59% | 79.41% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 39 | 56.41% | 43.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1119389806 | A->G | INTERGENIC | None |