Detailed information of SNP:
|
SNP ID:
sf1119400305(Gbrowse)
Chromosome: chr11 Position: 19400305 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 94.76% | 5.24% |
| All Indica | 793 | 91.05% | 8.95% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 374 | 87.17% | 12.83% |
| Indica II | 212 | 97.17% | 2.83% |
| Indica Intermediate | 207 | 91.79% | 8.21% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1119400305 | T->C | LOC_Os11g33970(LOC_Os11g33970.1) | INTRON |