Detailed information of SNP:
|
SNP ID:
sf1119402032(Gbrowse)
Chromosome: chr11 Position: 19402032 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1402 | 67.05% | 32.95% |
| All Indica | 791 | 88.12% | 11.88% |
| All Japonica | 495 | 35.56% | 64.44% |
| Aus | 60 | 60.00% | 40.00% |
| Indica I | 368 | 83.97% | 16.03% |
| Indica II | 213 | 89.67% | 10.33% |
| Indica Intermediate | 210 | 93.81% | 6.19% |
| Temperate Japonica | 335 | 16.12% | 83.88% |
| Tropical Japonica | 92 | 80.43% | 19.57% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1119402032 | A->G | LOC_Os11g33970(LOC_Os11g33970.1) | INTRON |