Detailed information of SNP:
|
SNP ID:
sf1119426622(Gbrowse)
Chromosome: chr11 Position: 19426622 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 80.85% | 19.15% |
| All Indica | 799 | 94.74% | 5.26% |
| All Japonica | 496 | 63.51% | 36.49% |
| Aus | 66 | 43.94% | 56.06% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 83.41% | 16.59% |
| Temperate Japonica | 335 | 82.99% | 17.01% |
| Tropical Japonica | 93 | 19.35% | 80.65% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1119426622 | T->A | INTERGENIC | None |