Detailed information of SNP:
|
SNP ID:
sf1119437667(Gbrowse)
Chromosome: chr11 Position: 19437667 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 87.94% | 12.06% |
| All Indica | 794 | 98.11% | 1.89% |
| All Japonica | 494 | 69.43% | 30.57% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 206 | 92.72% | 7.28% |
| Temperate Japonica | 334 | 88.02% | 11.98% |
| Tropical Japonica | 94 | 23.40% | 76.60% |
| Japonica Intermediate | 66 | 40.91% | 59.09% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1119437667 | G->T | INTERGENIC | None |