Detailed information of SNP:
|
SNP ID:
sf1119438623(Gbrowse)
Chromosome: chr11 Position: 19438623 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 54.85% | 45.15% |
| All Indica | 798 | 90.85% | 9.15% |
| All Japonica | 496 | 3.23% | 96.77% |
| Aus | 65 | 26.15% | 73.85% |
| Indica I | 374 | 97.86% | 2.14% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 211 | 80.57% | 19.43% |
| Temperate Japonica | 334 | 3.59% | 96.41% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 42.50% | 57.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1119438623 | G->A | LOC_Os11g34050(LOC_Os11g34050.1) | Non-Synonymous SNP |