Detailed information of SNP:
|
SNP ID:
sf1119457205(Gbrowse)
Chromosome: chr11 Position: 19457205 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 64.55% | 35.45% |
| All Indica | 797 | 66.62% | 33.38% |
| All Japonica | 496 | 66.33% | 33.67% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 375 | 64.53% | 35.47% |
| Indica II | 213 | 69.01% | 30.99% |
| Indica Intermediate | 209 | 67.94% | 32.06% |
| Temperate Japonica | 334 | 86.23% | 13.77% |
| Tropical Japonica | 94 | 21.28% | 78.72% |
| Japonica Intermediate | 68 | 30.88% | 69.12% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1119457205 | A->C | INTERGENIC | None |