Detailed information of SNP:
|
SNP ID:
sf1119457435(Gbrowse)
Chromosome: chr11 Position: 19457435 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 79.31% | 20.69% |
| All Indica | 798 | 86.84% | 13.16% |
| All Japonica | 496 | 66.94% | 33.06% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 88.27% | 11.73% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 210 | 75.24% | 24.76% |
| Temperate Japonica | 335 | 86.57% | 13.43% |
| Tropical Japonica | 94 | 22.34% | 77.66% |
| Japonica Intermediate | 67 | 31.34% | 68.66% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1119457435 | T->C | INTERGENIC | None |