Detailed information of SNP:
|
SNP ID:
sf1119459435(Gbrowse)
Chromosome: chr11 Position: 19459435 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 50.00% | 50.00% |
| All Indica | 795 | 84.15% | 15.85% |
| All Japonica | 497 | 2.62% | 97.38% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 375 | 87.73% | 12.27% |
| Indica II | 209 | 90.43% | 9.57% |
| Indica Intermediate | 211 | 71.56% | 28.44% |
| Temperate Japonica | 335 | 3.28% | 96.72% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 36.59% | 63.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1119459435 | G->A | LOC_Os11g34070(LOC_Os11g34070.1) | INTRON |