Detailed information of SNP:
|
SNP ID:
sf1119459699(Gbrowse)
Chromosome: chr11 Position: 19459699 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1384 | 59.32% | 40.68% |
| All Indica | 798 | 94.99% | 5.01% |
| All Japonica | 497 | 3.62% | 96.38% |
| Aus | 35 | 62.86% | 37.14% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 210 | 84.29% | 15.71% |
| Temperate Japonica | 335 | 3.88% | 96.12% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1119459699 | G->A | LOC_Os11g34070(LOC_Os11g34070.1) | INTRON |