Detailed information of SNP:
|
SNP ID:
sf1119469488(Gbrowse)
Chromosome: chr11 Position: 19469488 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1396 | 64.54% | 35.46% |
| All Indica | 794 | 46.22% | 53.78% |
| All Japonica | 496 | 97.98% | 2.02% |
| Aus | 54 | 25.93% | 74.07% |
| Indica I | 373 | 46.38% | 53.62% |
| Indica II | 211 | 46.92% | 53.08% |
| Indica Intermediate | 210 | 45.24% | 54.76% |
| Temperate Japonica | 334 | 98.20% | 1.80% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 52.63% | 47.37% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1119469488 | T->C | INTERGENIC | None |