Detailed information of SNP:
|
SNP ID:
sf1119477420(Gbrowse)
Chromosome: chr11 Position: 19477420 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1310 | 66.11% | 33.89% |
| All Indica | 698 | 91.12% | 8.88% |
| All Japonica | 494 | 28.14% | 71.86% |
| Aus | 62 | 96.77% | 3.23% |
| Indica I | 319 | 92.48% | 7.52% |
| Indica II | 188 | 89.36% | 10.64% |
| Indica Intermediate | 191 | 90.58% | 9.42% |
| Temperate Japonica | 332 | 14.16% | 85.84% |
| Tropical Japonica | 94 | 47.87% | 52.13% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1119477420 | A->G | INTERGENIC | None |