Detailed information of SNP:
|
SNP ID:
sf1119482178(Gbrowse)
Chromosome: chr11 Position: 19482178 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 56.78% | 43.22% |
| All Indica | 797 | 87.45% | 12.55% |
| All Japonica | 497 | 3.42% | 96.58% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 89.84% | 10.16% |
| Indica II | 212 | 94.34% | 5.66% |
| Indica Intermediate | 211 | 76.30% | 23.70% |
| Temperate Japonica | 335 | 3.28% | 96.72% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1119482178 | T->A | INTERGENIC | None |