Detailed information of SNP:
|
SNP ID:
sf1119492636(Gbrowse)
Chromosome: chr11 Position: 19492636 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 56.31% | 43.69% |
| All Indica | 799 | 86.48% | 13.52% |
| All Japonica | 497 | 3.62% | 96.38% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 89.07% | 10.93% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 74.88% | 25.12% |
| Temperate Japonica | 335 | 3.58% | 96.42% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1119492636 | A->C | LOC_Os11g34110(LOC_Os11g34110.1) | INTRON |