Detailed information of SNP:
|
SNP ID:
sf1119492877(Gbrowse)
Chromosome: chr11 Position: 19492877 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 56.78% | 43.22% |
| All Indica | 798 | 87.22% | 12.78% |
| All Japonica | 497 | 3.62% | 96.38% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 89.33% | 10.67% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 210 | 76.19% | 23.81% |
| Temperate Japonica | 335 | 3.58% | 96.42% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1119492877 | A->T | LOC_Os11g34110(LOC_Os11g34110.1) | INTRON |