Detailed information of SNP:
|
SNP ID:
sf1119501888(Gbrowse)
Chromosome: chr11 Position: 19501888 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 54.71% | 45.29% |
| All Indica | 791 | 41.34% | 58.66% |
| All Japonica | 497 | 71.63% | 28.37% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 374 | 38.50% | 61.50% |
| Indica II | 207 | 37.68% | 62.32% |
| Indica Intermediate | 210 | 50.00% | 50.00% |
| Temperate Japonica | 335 | 84.78% | 15.22% |
| Tropical Japonica | 94 | 53.19% | 46.81% |
| Japonica Intermediate | 68 | 32.35% | 67.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1119501888 | G->A | INTERGENIC | None |