Detailed information of SNP:
|
SNP ID:
sf1119502620(Gbrowse)
Chromosome: chr11 Position: 19502620 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 95.60% | 4.40% |
| All Indica | 790 | 94.43% | 5.57% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 206 | 85.92% | 14.08% |
| Indica Intermediate | 209 | 96.65% | 3.35% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1119502620 | C->T | INTERGENIC | None |