Detailed information of SNP:
|
SNP ID:
sf1119532200(Gbrowse)
Chromosome: chr11 Position: 19532200 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1391 | 95.33% | 4.67% |
| All Indica | 772 | 92.23% | 7.77% |
| All Japonica | 496 | 98.99% | 1.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 348 | 83.33% | 16.67% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1119532200 | C->T | INTERGENIC | None |